BioFET-SIM Online

BioFET-SIM 2.0

Use Alt-left (Alt-right on Linux) and drag the structure to adjust the orientation.

Interface repository, command line version repository.
Notifications of observed errors are welcomed at: biofetsim at gmail dot com.
Instruction videos demonstrating interface operation are available.

Please cite these references in publications:

De Vico et al., Nanoscale, 2011.
De Vico et al., Nanoscale, 2011.
Hediger et al., PLoS ONE, 2012.
Hediger et al., Nanoscale Sensors, 2014.

Interface requirements:

First line of uploaded file must be "MODEL 1"
Last line of uploaded file must be "END"
NMR solution structures are not supported at the moment
We recommend to use SUN Java
Saving of state file requires "Allow" of signed applet
Filenames of uploaded files should not contain white spaces.

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The BioFET method is developed by the
Jensen Research Group
Department of Chemistry
University of Copenhagen

Structure:		Download BioFET-SIM Signal (right-click, "Save as...")
Q_tot at pH 0.0: 0.0 [e]		Download pH Response (right-click, "Save as...")
Base conductance G₀:
Sensitivity:

NW Properties	Value	Lower Limit	Upper Limit	Plot
NW Length [nm]:
NW Radius [nm]:
Thomas-Fermi Length [nm]:
NW Permittivity [ε₀]:
Charge Carrier Mobility [m²V^-1s^-1]:
Charge Carrier Density [m^-3]:
NW Type:	p-type	n-type
Oxide and Biofunctionalization Layer Properties
Oxide Layer Thickness [nm]:
Oxide Layer Permittivity [ε₀]:
Biofunctionalization Thickness [nm]:
Solvent Properties
Debye Length [nm]:
Solvent Permittivity [ε₀]:
Calculation
Charge Model	Single	Multiple
Number of Proteins on NW:		Constant?
Add comment to BFS input file:
Download BioFET-SIM input (right-click, "Save as...")